PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g61110.1.p
Common NameBRADI_1g61110, LOC100832803
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 264aa    MW: 28558.8 Da    PI: 5.6409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g61110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.1e-053987254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      +  + erE+  Rd++N+ f  L  +l  +     + + Ka iL+ +++ +++L
  Bradi1g61110.1.p 39 KIHKAEREKHKRDKLNDLFGDLGNMLEAD----RQNNGKACILTDTTRILRDL 87
                      667889********************997....57788888888888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.9E-934106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1037116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.1373787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVAMGSGNVS AATVSDGSAE KIVRGPVSDN KCKKKAPRKI HKAEREKHKR DKLNDLFGDL  60
GNMLEADRQN NGKACILTDT TRILRDLLSQ LESLRKENST LLNESHYVTM ERDELQDENS  120
VLRNEILELQ NELAMQVASN QGWGHGATTG SPLPVSHATS TVFPAQQPPS ITGAVFPLQQ  180
LTAIAQSYAA PPRELKLFPD AASVEGLEQS EHQEALNHVA RPQARYPTES ASWPVSLGLP  240
RMEDEQCSSS TTGSSKEASS GSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557817.10.0PREDICTED: transcription factor bHLH47
TrEMBLI1H5060.0I1H506_BRADI; Uncharacterized protein
STRINGBRADI1G61110.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Representative plantOGRP6793812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.37e-28bHLH family protein